Monday, December 31, 2007

MindBlog freezes and thaws again





A holiday trip back to Madison Wisconsin, view from front door and back door of house on Twin Valley Road - just before the third time I had to shovel the walk... another 6 inches of snow since I left to return...

...back to Fort Lauderdale, view from front and back of condo on the South branch of the Middle River, 60-70 degree farenheit temperature increase:


Repressed Memory - A recent cultural invention?

Literary references to depression, hallucinations, anxiety, and dementia can be found throughout history. A fascinating article in Harvard Magazine by Ashley Pettus describes the research of Harrison Pope, who reasoned that if dissociative amnesia were an innate capability of the brain it also should appear in ancient texts. An extensive search, and a $1000 reward, was able to find no reference earlier than Nina, an opera by Dalayrac and Marsollier performed in Paris in 1786. The absence of dissociative amnesia in works prior to 1800 suggests that the phenomenon is not a natural neurological function, but rather a “culture-bound” syndrome rooted in the nineteenth century. From the article:
What, then, accounts for “repressed memory’s” appearance in the nineteenth century and its endurance today? Pope and his colleagues hope to answer these questions in the future. “Clearly the rise of Romanticism, at the end of the Enlightenment, created fertile soil for the idea that the mind could expunge a trauma from consciousness,” Pope says. He notes that other pseudo-neurological symptoms (such as the female “swoon”) emerged during this era, but faded relatively quickly. He suspects that two major factors helped solidify “repressed memory” in the twentieth-century imagination: psychoanalysis (with its theories of the unconscious) and Hollywood. “Film is a perfect medium for the idea of repressed memory,” he says. “Think of the ‘flashback,’ in which a whole childhood trauma is suddenly recalled. It’s an ideal dramatic device.”

Friday, December 28, 2007

Cognitive Recovery in Socially Deprived Young Children

With elaborate consideration of the ethical issues involved (commented on by Millum and Emanuel), Nelson et al. have compared the cognitive development of abandoned children reared in institutions to abandoned children placed in institutions but then moved to foster care (The Bucharest Early Intervention Project):
In a randomized controlled trial, we compared abandoned children reared in institutions to abandoned children placed in institutions but then moved to foster care. Young children living in institutions were randomly assigned to continued institutional care or to placement in foster care, and their cognitive development was tracked through 54 months of age. The cognitive outcome of children who remained in the institution was markedly below that of never-institutionalized children and children taken out of the institution and placed into foster care. The improved cognitive outcomes we observed at 42 and 54 months were most marked for the youngest children placed in foster care. These results point to the negative sequelae of early institutionalization, suggest a possible sensitive period in cognitive development, and underscore the advantages of family placements for young abandoned children.

Motion perception and production - similar neural coding

Another example of how our brain's representations of motion are tuned to biological actions. Here is the abstract of the open access article from Dayan et al., which contains some very elegant imaging figures:
Behavioral and modeling studies have established that curved and drawing human hand movements obey the 2/3 power law, which dictates a strong coupling between movement curvature and velocity. Human motion perception seems to reflect this constraint. The functional MRI study reported here demonstrates that the brain's response to this law of motion is much stronger and more widespread than to other types of motion. Compliance with this law is reflected in the activation of a large network of brain areas subserving motor production, visual motion processing, and action observation functions. Hence, these results strongly support the notion of similar neural coding for motion perception and production. These findings suggest that cortical motion representations are optimally tuned to the kinematic and geometrical invariants characterizing biological actions.

[Note: The 2/3 power law links path curvature C and angular velocity A along the movement by a power law with an exponent of 2/3. K is the velocity gain factor, which is piecewise constant during entire movement segments:
]

Thursday, December 27, 2007

Monkeys and college students: similar in non-verbal math

This work from Cantlon and Brannon suggests that humans and nonhuman primates share a cognitive system for nonverbal arithmetic, suggesting an evolutionary link in their cognitive abilities., full text in PLoS Biology, here is the abstract:
Adult humans possess mathematical abilities that are unmatched by any other member of the animal kingdom. Yet, there is increasing evidence that the ability to enumerate sets of objects nonverbally is a capacity that humans share with other animal species. That is, like humans, nonhuman animals possess the ability to estimate and compare numerical values nonverbally. We asked whether humans and nonhuman animals also share a capacity for nonverbal arithmetic. We tested monkeys and college students on a nonverbal arithmetic task in which they had to add the numerical values of two sets of dots together and choose a stimulus from two options that reflected the arithmetic sum of the two sets. Our results indicate that monkeys perform approximate mental addition in a manner that is remarkably similar to the performance of the college students. These findings support the argument that humans and nonhuman primates share a cognitive system for nonverbal arithmetic, which likely reflects an evolutionary link in their cognitive abilities.

Human genetic variation - breakthrough of the year

We differ from each other in the number and order of our genes, and in their composition. A few edited clips from E. Pennisi's summary of Science Magazine's breakthrough of the year in the Dec. 21 issue:

There are an estimated 15 million places along our genomes where one base can differ from one person or population to the next. By mid-2007, more than 3 million such locations, known as single-nucleotide polymorphisms (SNPs), had been charted. Called the HapMap, this catalog has made the use of SNPs to track down genes involved in complex diseases--so-called genome-wide association studies--a reality....New gene associations now exist for type I and II diabetes, heart disease, breast cancer, restless leg syndrome, atrial fibrillation, glaucoma, amyotrophic lateral sclerosis, multiple sclerosis, rheumatoid arthritis, colorectal cancer, ankylosing spondylitis, and autoimmune diseases. One study even identified two genes in which particular variants can slow the onset of AIDS, demonstrating the potential of this approach for understanding why people vary in their susceptibility to infectious diseases.

Genomes can differ in many other ways. Bits of DNA ranging from a few to many thousands, even millions, of bases can get lost, added, or turned around in an individual's genome. Such revisions can change the number of copies of a gene or piece of regulatory DNA or jam two genes together, changing the genes'products or shutting them down. This year marked a tipping point, as researchers became aware that these changes, which can alter a genome in just a few generations, affect more bases than SNPs....In one study, geneticists discovered 3600 so-called copy number variants among 95 individuals studied. Quite a few overlapped genes, including some implicated in our individuality--blood type, smell, hearing, taste, and metabolism, for example. Individual genomes differed in size by as many as 9 million bases.


Wednesday, December 26, 2007

Learning from errors - genetic differences between humans

From Holden's brief summary of the work:
"Once burned, twice shy" works for most people. But some people are slow to learn from bad experiences.
This work shows that:
...people with a particular gene variant have more difficulty learning via negative reinforcement.
...demonstrates that a single-base-pair difference in the genome is associated with a remarkably different ability to learn from past mistakes is quite an accomplishment
...combines brain imaging with a task in which participants chose between symbols on a computer screen,
...centers on the A1 variant, or allele, of the gene encoding the D2 receptor, a protein on the surface of brain cells activated by the neurotransmitter dopamine. Earlier studies have hinted that this variant alters the brain's reward pathways and thereby makes people more vulnerable to addictions.
Brain activity was monitored (color) as a subject chose between two symbols (inset) and was rewarded with a smiley or frowny face. In the left panel the lower colors are hippocampus, the upper one the posterior medial frontal cortex.

Here is the abstract from Klein et al.
The role of dopamine in monitoring negative action outcomes and feedback-based learning was tested in a neuroimaging study in humans grouped according to the dopamine D2 receptor gene polymorphism DRD2-TAQ-IA. In a probabilistic learning task, A1-allele carriers with reduced dopamine D2 receptor densities learned to avoid actions with negative consequences less efficiently. Their posterior medial frontal cortex (pMFC), involved in feedback monitoring, responded less to negative feedback than others' did. Dynamically changing interactions between pMFC and hippocampus found to underlie feedback-based learning were reduced in A1-allele carriers. This demonstrates that learning from errors requires dopaminergic signaling. Dopamine D2 receptor reduction seems to decrease sensitivity to negative action consequences, which may explain an increased risk of developing addictive behaviors in A1-allele carriers.

Another difference in the brains of musicians...

Being a performing musician myself (cf. the YouTube video below), I'm always fascinated by work of the sort recently done by Chen et al. They show that musicians use the prefrontal cortex to a greater degree than nonmusicians to deconstruct and organize a rhythm's temporal structure. Here is their abstract (I will spare you the MRI images this time), followed by a bit of free music...
Much is known about the motor system and its role in simple movement execution. However, little is understood about the neural systems underlying auditory–motor integration in the context of musical rhythm, or the enhanced ability of musicians to execute precisely timed sequences. Using functional magnetic resonance imaging, we investigated how performance and neural activity were modulated as musicians and nonmusicians tapped in synchrony with progressively more complex and less metrically structured auditory rhythms. A functionally connected network was implicated in extracting higher-order features of a rhythm's temporal structure, with the dorsal premotor cortex mediating these auditory–motor interactions. In contrast to past studies, musicians recruited the prefrontal cortex to a greater degree than nonmusicians, whereas secondary motor regions were recruited to the same extent. We argue that the superior ability of musicians to deconstruct and organize a rhythm's temporal structure relates to the greater involvement of the prefrontal cortex mediating working memory.
Haydn Fantasia:

Monday, December 24, 2007

J. S. Bach - Christmas Oratorio - Schlafe, mein Liebster

John Eliot Gardiner leads the Monteverdi Choir and the English Baroque Soloists, with Bernarda Fink in "Schlafe, mein Liebster," from Bach's Christmas Oratorio (BWV 248).

Schlafe, mein Liebster, genieße der Ruh,
Wache nach diesem vor aller Gedeihen!
Labe die Brust,
Empfinde die Lust,
Wo wir unser Herz erfreuen!

Sleep now, my dearest, enjoy now thy rest,
Wake on the morrow to flourish in splendor!
Lighten thy breast,
With joy be thou blest,
Where we hold our heart's great pleasure!

Neural correlates of trust

Krueger et al. offer an MRI study of brain changes that occur during a reciprocal trust game. They:
.used hyperfunctional magnetic resonance imaging, in which two strangers interacted online with one another in a sequential reciprocal trust game while their brains were simultaneously scanned. By designing a nonanonymous, alternating multiround game, trust became bidirectional, and we were able to quantify partnership building and maintenance...We show that the paracingulate cortex is critically involved in building a trust relationship by inferring another person's intentions to predict subsequent behavior. This more recently evolved brain region can be differently engaged to interact with more primitive neural systems in maintaining conditional and unconditional trust in a partnership. Conditional trust selectively activated the ventral tegmental area, a region linked to the evaluation of expected and realized reward, whereas unconditional trust selectively activated the septal area, a region linked to social attachment behavior. The interplay of these neural systems supports reciprocal exchange that operates beyond the immediate spheres of kinship, one of the distinguishing features of the human species.

Figure - Brain responses for decisions to trust. (a) Trust building. Decisions to trust contrasted with the control condition activated the PcC (Brodmann's areas, BA 9/32). (b) Trust maintenance. Decisions to trust contrasted with the control condition activated the SA (together with the adjoining hypothalamus)

Laws of Nature as resting on faith...

Dennis Overbye does a brief piece in the Dec. 18 NY Times that derives from the small firestorm of commentary ignited by a previous OpEd piece by Paul Davis, an Arizona State Univ. cosmologist, asserting that science, not unlike religion, rests on faith, not in God but in the idea of an orderly universe. (I almost did a post on that OpEd article, but decided not to). The not so minor difference, of course, is that the "laws" of science simply reflect that the order we perceive in nature has been explored and tested for more than 2,000 years by observation and experimentation. The methods of science are well known. What are the methods of faith? Overbye's article proceeds to describe positions held by a number of prominent philosophers, physicists, and cosmologists on the underlying nature of the universe.

I'm with the late Nobel laureate physicist Richard Feynman, whose famous quote is included in the article - “Philosophy of science is about as useful to scientists as ornithology is to birds.”

Friday, December 21, 2007

Children attributing causality - extension to religious and political imitation.

Blog reader Rick Thomas makes a brief comment on the previous post on children attributing causality (a comment I wish I had made), that is sufficiently pungent to bring into a post where more people will note it:
" Fascinating. I guess the effect will extend to adult religious and political imitation as well."

Even though the experiments of Lyons et al. mentioned in the previous post deal with imitation of mechanical sequences, the same tenacious and irrational attribution of causality might explain why people find it so difficult to overcome habits instilled by their early religious and political environment.

The hidden structure of over-imitation

Human children, unlike chimpanzees, will copy unnecessary or arbitrary parts of an action sequence they observe in adults, Lyons et al. term this process overimitation and suggest in an open access article with the title of this post that it reveals a hidden structure behind how children learn to attribute causality. Here is their abstract, and a graphic showing one of the three puzzle boxes used in the experiements:
Young children are surprisingly judicious imitators, but there are also times when their reproduction of others' actions appears strikingly illogical. For example, children who observe an adult inefficiently operating a novel object frequently engage in what we term overimitation, persistently reproducing the adult's unnecessary actions. Although children readily overimitate irrelevant actions that even chimpanzees ignore, this curious effect has previously attracted little interest; it has been assumed that children overimitate not for theoretically significant reasons, but rather as a purely social exercise. In this paper, however, we challenge this view, presenting evidence that overimitation reflects a more fundamental cognitive process. We show that children who observe an adult intentionally manipulating a novel object have a strong tendency to encode all of the adult's actions as causally meaningful, implicitly revising their causal understanding of the object accordingly. This automatic causal encoding process allows children to rapidly calibrate their causal beliefs about even the most opaque physical systems, but it also carries a cost. When some of the adult's purposeful actions are unnecessary—even transparently so—children are highly prone to mis-encoding them as causally significant. The resulting distortions in children's causal beliefs are the true cause of overimitation, a fact that makes the effect remarkably resistant to extinction. Despite countervailing task demands, time pressure, and even direct warnings, children are frequently unable to avoid reproducing the adult's irrelevant actions because they have already incorporated them into their representation of the target object's causal structure.

Vegansexuality

Jeff Stryker gives us more from the fringe (Dec. 9 NY Times Magazine):
Forget homo-, bi- or even metro-: the latest prefix in sexuality is vegan-, as in “vegansexual.” In a study released in May, Annie Potts, a researcher at the University of Canterbury and a director of the New Zealand Centre for Human-Animal Studies, surveyed 157 vegans and vegetarians (120 of them women) on the topic of cruelty-free living. The questions ranged from attitudes about eating meat to keeping pets to wearing possum fur to, yes, “cruelty-free sex” — that is, “rejecting meat eaters as intimate partners.”

Some of the survey respondents volunteered their reluctance to kiss meat eaters. “I couldn’t think of kissing lips that allow dead animal pieces to pass between them,” a 49-year-old vegan woman from Auckland said. For some, the resistance is the squeamishness factor. “Nonvegetarian bodies smell different to me,” a 41-year-old Christchurch vegan woman said. “They are, after all, literally sustained through carcasses — the murdered flesh of others.” For some, it is a question of finding a like-minded life partner. An Auckland ovo-vegetarian had tried a relationship with a carnivore, but reported that despite the sexual attraction, the gulf in “shared values and moral codes” was just too wide.

Potts, who coined the term vegansexuality, says the “negative response of omnivores” to her study has surprised her. Even some fellow animal lovers question the wisdom of vegansexuality. A blog for People for the Ethical Treatment of Animals noted that sleeping with only fellow vegans means forgoing the opportunity to turn carnivores into vegans by the most powerful recruiting tool available — sex.

PETA’s founder and president, Ingrid Newkirk, agrees that vegans smell fresher. (“There’s science to prove it,” she says.) But Newkirk is all about the recruiting, even if it means one convert at a time. “When my staff members come to me and say: ‘Guess what? My boyfriend, now he’s a vegan,’ I say, half-jokingly: ‘Well, it is time to ditch him and get another. You’ve done your work; move on.’ ”

Thursday, December 20, 2007

Selling brain science... Neurorealism

Matthew Hutson makes some good points in his brief comments on all those pretty brain imaging graphics you see in this MindBlog as well the daily press:
You’ve seen the headlines: This Is Your Brain on Politics. Or God. Or Super Bowl Ads. And they’re always accompanied by pictures of brains dotted with seemingly significant splotches of color. Now some scientists have seen enough. We’re like moths, they say, lured by the flickering lights of neuroimaging — and uncritically accepting of conclusions drawn from it.

A paper published online in September by the journal Cognition shows that assertions about psychology — even implausible ones like “watching television improved math skills” — seem much more believable to laypeople when accompanied by images from brain scans. And a paper accepted for publication by The Journal of Cognitive Neuroscience demonstrates that adding even an extraneous reference to the brain to a bad explanation of human behavior makes the explanation seem much more satisfying to nonexperts.

Eric Racine, a bioethicist at the Montreal Clinical Research Institute, coined the word neurorealism to describe this form of credulousness. In an article called “fMRI in the Public Eye,” he and two colleagues cited a Boston Globe article about how high-fat foods activate reward centers in the brain. The Globe headline: “Fat Really Does Bring Pleasure.” Couldn’t we have proved that with a slice of pie and a piece of paper with a check box on it?

The way conclusions from cognitive neuroscience studies are reported in the popular press, “they don’t necessarily tell us anything we couldn’t have found out without using a brain scanner,” says Deena Weisberg, an author of the Journal of Cognitive Neuroscience paper. “It just looks more believable now that we have the pretty pictures.”

Racine says he is particularly troubled by the thought of crude or unscrupulous applications of this young science to the diagnosis of psychiatric conditions, the evaluation of educational programs and the assessment of defendants in criminal trials. Drawing inferences from the data requires several degrees of analysis and interpretation, he says, and treating neuroimaging as a mind-reading technique “would be adding extra scientific credibility that is not necessarily warranted.”

Race and IQ - a few crisp facts

The debate over race and IQ seems endless and mind-numbing, usually generating more heat than light. A recent Op-Ed piece by Richard Nisbett, brief and to the point, collects several facts:
About 25 percent of the genes in the American black population are European, meaning that the genes of any individual can range from 100 percent African to mostly European. If European intelligence genes are superior, then blacks who have relatively more European genes ought to have higher I.Q.’s than those who have more African genes. But it turns out that skin color and “negroidness” of features — both measures of the degree of a black person’s European ancestry — are only weakly associated with I.Q. (even though we might well expect a moderately high association due to the social advantages of such features).

During World War II, both black and white American soldiers fathered children with German women. Thus some of these children had 100 percent European heritage and some had substantial African heritage. Tested in later childhood, the German children of the white fathers were found to have an average I.Q. of 97, and those of the black fathers had an average of 96.5, a trivial difference.

If European genes conferred an advantage, we would expect that the smartest blacks would have substantial European heritage. But when a group of investigators sought out the very brightest black children in the Chicago school system and asked them about the race of their parents and grandparents, these children were found to have no greater degree of European ancestry than blacks in the population at large.

.. a superior adoption study...looked at black and mixed-race children adopted by middle-class families, either black or white, and found no difference in I.Q. between the black and mixed-race children....children adopted by white families had I.Q.’s 13 points higher than those of children adopted by black families. The environments that even middle-class black children grow up in are not as favorable for the development of I.Q. as those of middle-class whites.

James Flynn, a philosopher and I.Q. researcher in New Zealand, has established that in the Western world as a whole, I.Q. increased markedly from 1947 to 2002. In the United States alone, it went up by 18 points. Our genes could not have changed enough over such a brief period to account for the shift; it must have been the result of powerful social factors. And if such factors could produce changes over time for the population as a whole, they could also produce big differences between subpopulations at any given time.

...interventions at every age from infancy to college can reduce racial gaps in both I.Q. and academic achievement, sometimes by substantial amounts in surprisingly little time. This mutability is further evidence that the I.Q. difference has environmental, not genetic, causes.

Video of independent leg movement controllers

Here, as a companion to my Sept. 20 post "Walking the walk" is a video illustrating the independent controllers of our right and left legs during walking.

Wednesday, December 19, 2007

The God Effect

Here I pass on another bit, by Marina Krakovsky, in the NY Times Magazine's Dec. 9 "Ideas" issue. She summarizes work by Canadian psychologists Shariff and Norenzayan published in Psychological Science:
Some anthropologists argue that the idea of God first arose in larger societies, for the purpose of curbing selfishness and promoting cooperation. Outside a tightly knit group, the reasoning goes, nobody can keep an eye on everyone’s behavior, so these cultures invented a supernatural agent who could. But does thinking of an omniscient God actually promote altruism? The University of British Columbia psychologist Ara Norenzayan wanted to find out.

In a pair of studies published in Psychological Science, Norenzayan and his student Azim F. Shariff had participants play the so-called “dictator game,” a common way of measuring generosity toward strangers. The game is simple: you’re offered 10 $1 coins and told to take as many as you want and leave the rest for the player in the other room (who is, unbeknown to you, a research confederate). The fair split, of course, is 50-50, but most anonymous “dictators” play selfishly, leaving little or nothing for the other player.

In the control group of Norenzayan’s study, the vast majority of participants kept everything or nearly everything — whether or not they said they were religious. “Religious leaders always complain that people don’t internalize religion, and they’re right,” Norenzayan observes.

But is there a way to induce generosity? In the experimental condition, the researchers prompted thoughts of God using a well-established “priming” technique: participants, who again included both theists and atheists, first had to unscramble sentences containing words such as God, divine and sacred. That way, going into the dictator game, players had God on their minds without being consciously aware of it. Sure enough, the “God prime” worked like a charm, leading to fairer splits. Without the God prime, only 12 percent of the participants split the money evenly, but when primed with the religious words, 52 percent did.

When news of these findings made headlines, some atheists were appalled by the implication that altruism depends heavily on religion. Apparently, they hadn’t heard the whole story. In a second study, the researchers had participants unscramble sentences containing words like civic, contract and police — meant to evoke secular moral institutions. This prime also increased generosity. And unlike the religious prime, it did so consistently for both believers and nonbelievers. Until he conducts further research, Norenzayan can only speculate about the significance: “We need that common denominator that works for everyone.

A Mea Culpa - Pinker and his critics

I think in general that Steven Pinker goes way overboard on the nativist angle, and so recently approvingly passed on this Churchland review in the Nov. 1 issue of Nature critical of Pinker's new book, "The Language of Thought." - I hadn't actually read the book. These retorts by Marc Hauser and Pinker himself in the Dec. 6 issue make me realize that I should have. I have zapped my original post, and I'm now going to read the book......(one thing about doing a blog is that you read fewer good long books). I admit to a residual grumpyness about Pinker (a brilliant man) from his visit to Wisconsin a number of years ago as a featured speaker. He was dragged through the usual torture of serial 30 minute interviews with local "prominent persons" (I was the Zoology Chair at that time), and during our conversation I found him to be quite remote. At his talk he read from a typescript - word for word - a lecture that I had already heard twice before.

Tuesday, December 18, 2007

Seasonal Affective Disorder - an evolutionary relic?

Friedman offers a succinct summary of information of seasonal affective disorder (SAD), with some interesting facts.
Epidemiological studies estimate that its prevalence in the adult population ranges from 1.4 percent (Florida) to 9.7 percent (New Hampshire).
In one study, patients with SAD
...had a longer duration of nocturnal melatonin secretion in the winter than in the summer, just as with other mammals with seasonal behavior.Why did the normal patients show no seasonal change in melatonin secretion? One possibility is exposure to industrial light, which can suppress melatonin.
...The effects of light therapy are fast, usually four to seven days, compared with antidepressants, which can take four to six weeks to work.
...People are most responsive to light therapy early in the morning, just when melatonin secretion begins to wane, about eight to nine hours after the nighttime surge begins...How can the average person figure that out without a blood test? By a simple questionnaire that assesses “morningness” or “eveningness” and that strongly correlates with plasma melatonin levels. The nonprofit Center for Environmental Therapeutics has a questionnaire on its Web site (www.cet.org).